The names I give to my programs are rather descriptive... Here's a non-exaustive list.
Games
3Danmaku: An attempt of a danmaku in 3D in DirectX.
Wacky Fun Random Number Generator Wii: Port of the game of the same name to the Wii.
The Quest: Attempt of a Menu(-based RPG in TI-BASIC I made long ago.
RPCO(d): Roche Papier Ciseaux Online. Comes with a client (rpco) and a server (rpcod) (d for daemon, almost all the *nix-based servers have d suffixed to their names)
Utilities
Trollian for XChat: Named after the trolls' chat client in
Homestuck, lets you talk like them on IRC.
ShadowBot: IRC bot written in C#, Named after one of 57o9's administrators.
Teirusu: Another IRC bot written in PHP named after Sonic the Hedgehog's sidekick and handyman, Tails.
Yuki: Fork of Teirusu, means "snow" in Japanese, named after the snow we got here in Québec. Also named after Yuki Nagato, the nearly emotionless intelligence in the anime
The Melancholy of Haruhi Suzumiya.
MeteoMedia: An IRC bot (Seems that I love to make bots...) written in Bash, fetches the temperature from meteomedia.com, the local weather TV channel.
And lots of other utilities named after what they actually do.